That'd be risky, especially if you are going to be running multiple drives. You're probably better off with a mATX system, maintains a relatively small form factor, and has room for a GPU and RAID card should you ever decide to go that route. Pick up a Lian Li box, they're beautiful and great for HTPC's (among other things). Send me a PM or reply if you would like me to do a full build on whatever your budget is. I'd be happy to help!
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